Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs419244 chr13:111176393 A/G 2.07E-5 119 9.45 35 44.38 KM Plot
THYM rs419683 chr1:8080712 G/C 2.58E-5 118 42.25 37.13 6 KM Plot
THYM rs4234656 chr3:118948155 C/T 5.55E-13 119 3.83 30.13 46.27 KM Plot
THYM rs4236507 chr7:76132270 C/A 0.000144 116 40.67 45.87 32.78 KM Plot
THYM rs4253288 chr4:187166893 T/C 1.26E-8 119 12.63 41.77 40.67 KM Plot
THYM rs4253407 chr4:187193308 A/T 1.58E-8 117 12.63 49.4 38.83 KM Plot
THYM rs4280817 chr4:6291903 G/T 1.25E-6 118 25.83 38.58 50.13 KM Plot
THYM rs4293850 chr4:6292020 A/C 3.33E-5 119 25.83 38.83 50.1 KM Plot
THYM rs4306096 chr1:227473444 C/T 0.000123 119 42.82 37.13 19.63 KM Plot
THYM rs4308429 chr4:6294001 A/G 1.25E-6 119 25.83 38.58 50.13 KM Plot
THYM rs4308430 chr4:6294095 A/G 1.6E-6 117 25.83 37.73 50.13 KM Plot
THYM rs4308751 chr8:131703856 G/A 0 118 44.38 27.2 2.9 KM Plot
THYM rs4321866 chr6:3267020 C/T 0 118 4.13 44.3 38.33 KM Plot
THYM rs4336318 chr5:179051238 C/T 0.000232 119 37.63 51 28.43 KM Plot
THYM rs4336485 chr6:3266388 C/T 0 119 4.13 42.73 38.33 KM Plot